Autosystem Gc Manual

  

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Prevention

Please consult this Heated GC Interface user manual and the PerkinElmer GC user manual before you start working with the Transfer Line and the GC. Save this manual on a safety place near the instrument: the manual is part of the Heated GC Interface. If lost, please order immediately a new one. Do not attempt to modify or override safety devices. Autosystem and Autosystem XL GCs is provided. Control the PerkinElmer Autosystem and Autosystem XL GCs with EZChrom Elite and Agilent OL Gas chromatographs from PerkinElmer are in widespread use throughout the world. Comprehensive instrument control software to control the popular PE Autosystem GC.

Many GC problems can be prevented if the column is properly installed and GC is maintained routinely. For example, replacing septa or liner at regular intervals and keeping the injector and detector clean and well-maintained shoud solve many problems. Regular preventive maintenance depends on particular model of GC and you should consult required operations in the operator's and service manuals.

For the problem identification we recommend to use electronic flowmeter and leak detector.

Baseline problems

Baseline problems could be divided into 5 categories: drift, noise, offset, spiking and wander.

  • Drift means slow baseline movement in one direction
  • Noise is rapid and random movement of the baseline position
  • Offset is sudden unexplained change of the baseline position
  • Spiking is presented by peaks with no width, either positive or negative
  • Wander is low frequency noise
Downward drift
Possible causeSuggestions
Downward drift for a few minutes is normal after installing a new columnIncrease the oven temperature to close to the maximum continuous operating temperature for the column. Maintain the temperature until flat baseline is observed. If the detector signal does not drop in 10 minutes, immediately cool the column and check for leaks.
Unequilibrated detectorAllow sufficient time for temperature equilibration of the detector.
Downward drift is frequently due to the 'back-out' of contaminants from the detector or other parts of the GCClean out contamination.
Upward drift
Possible causeSuggestions
Damage to the stationary phase of the GC columnDetermine the cause of the damage. It may be due to impurities in the carrier gas or to excessive temperatures. Replace column.
Drift in gas flow ratesClean or replace flow or pressure regulator(s). Adjust pressure.
Noise
Possible causeSuggestions
The column may be inserted too far into the flame of an FID, NPD or FPD detectorReinstall the column. Be sure to insert the column into the detector exactly the correct distance specified in the instrument manual.
An air leak can result in noise in ECD and TCD detectorsEliminate the leak.
Incorrect combustion gases or flow rates can generate nois in FID, NPD or FPD detectors.Be sure yuor gases are the proper grade, as well as clean and dry. Reset the flow rates of the gases to their proper values.
Contaminated injectorClean injector. Replace inlet liner, septa and selas.
Contaminated columnBake out the column. Cut off first 10 cm of column. If it does not help, replace the column.
Defective detectorClean and/or replace parts as necessary.
Defective detector boardConsult GC manufacturer.
Offset
Possible causeSuggestions
Line voltage changesMonitor line voltage for correlation with offset. If correlation is found, install voltage regulator or ensure stable power supply.
Poor electrical changesCheck electrical connections. Tighten any loose connections. Clean any dirty or corroded connections.
Contaminated injectorClean injector. Replace inlet liner, septa and selas.
Contaminated columnBake out the column. Cut off first 10 cm of column. If it does not help, replace the column.
Column inserted too fat into the flame of FID, NPD or FPD detectorsReinstall the column. Be sure to insert the column into the detector exactly the correct distance specified in the instrument manual.
Contaminated detectorClean the detector if possible.
Spiking
Possible causeSuggestions
Electrical disturbances entering the chromatograph through power cables, even shielded cablesTry to correlate spikes with events in equipment near the chromatograph. Periodicity is often a clue. Turn off equipment or move it. If necessary, install a voltage regulator.
Wander
Possible causeSuggestions
Baseline wandering may be caused by changes in environmental conditions such as temperature or line voltageTry to correlate the wandering with environmental parameters. If a correlation is observed, you will know what to do.
Inadequate temperature control Check if variations can be correlated with changes in the baseline position.Measure detector temperature.
Wandering while using isothermal conditions may be due to contaminated carrier gasChange the carrier gas or the gas purification traps.
Contaminated injectorClean injector. Replace inlet liner, glass wool and seals.
Contaminated columnBake out the column. Cut off first 10 cm of column. If it does not help, replace the column.

Distorted peak shapes

All peaks redused in size
Possible causeSuggestions
Sample validityCheck the concentration and stability of the sample.
Flattened top peaks
Possible causeSuggestions
Detector overload. The broad peaks may have a rounded top or even valleys in the top.Reduce sample volume, dilute with solvent or use higher split ratio.
Overload of the signal processing electronics. The peaks are clipped with flat tops.Attenuate detector output or reduce sample amount (see above).
Fronting peaks

Fronting peaks are usually the result of column overloading. In this case, the effect should be a function of injection volume. Solutions include reducing the injection volume or using a column with greatr capacity. Columns with larger diameter or thicker stationary phase coatings generally have larger sample capacities, however, resolution may be reduced.

Ghost peaks
Possible causeSuggestions
Remmants of previous samples in the inlet or column. Ghost peaks due to remmants are most likely to occur when increasing inlet or column temperatures.Increase the final temperature and lengthen the run time to allow for complete elution of previous samples. If ghost peaks continue to occur, clean the inlet. Condition the column at temperature higher than has been used but lower than the maximum continuous operation temperature for the column. Cut 10 cm off the inlet end of the column and/orreverese it before reconditioning it. If it does not help, replace the column.
Backflash may cause remmants. Backflash refers to vapours from the sample which expand to exceed the volume of the injector liner. These vapours may come in contact with colder spots, such as the septum and gas inlets of the injector. Less volatile components may condense. These condensates may vaporize later and interfere with subsequent analyses, sometimes producing 'ghost peaks'.
  • Use septum purge
  • Lower injection volume
  • Enlarge injector liner
  • Optimize injector temperature
  • Use pressure pulsed program
Bleed from the septum or fragments of the septum lodged in the inlet or liner.Clean the inlet. Replace the inlet liner, glass wool and seals.
Irreproducible peak heights or areas
Possible causeSuggestions
Inconsistent injectionDevelop a reproducible injection technique. Use autosampler.
Distorted peak shapes can adversely affect quantitative determinationsCorrect any problems that result in the distortion of peak shape. See Peak shape problems.
Baseline disturbancesSee Baseline problems.
Variations in GC operating parametersStandardize operating parameters.
Negative peaks
Possible causeSuggestions
Incorrect polarity of the recorderReverse polarity of recorder connections.
Incorrect setup in the softwareSet-up right parameters in your chromatography software.
Sample compound has greater thermal conductivity than the carrier gas and you are using a TCD or µTCD detectorIf possible, change carrier gas. Otherwise there is not a solution.
Detector overload in element-specific detectors such as ECD, NPD, FPD, etc., can produce both positive and negative peaksHave the compound of interest arrive at the detector at a different time from the solvent or other compounds in high concentration. H2 produces negative peaks with TCD (µTCD) and helium carrier gas.
Dirty ECD detector can give negative peak after a positive oneClean or replace the ECD detector.
No peaks at all
Possible causeSuggestions
Defective syringeTry a new or proven syringe.
'Blown' septum or massive leaks at the inletFind and fix leaks.
Problems with carrier gas flowAdjust gas flow. Check the column flow ath the column outlet by immersion to methanol.
Broken column or column installed in the wrong wayReplace or reinstall the column.
The detector is not functioning or not connected to the recorder or integrator.Ensure that detector is working properly. E.g.: Is the flame in a FID on? Check connection to the output device.
Selective sensitivity loss
Possible causeSuggestions
Contamination of column and/or liner can lead to loss of sensitivity for active compoundsClean liner. Bake out the column or replace it.
Injector leaks reduce the peak height of the most volatile components of a sample more than less volatileFind and fix any leaks.
Initial column temperature too high for splitless injection which can prevent refocusing of sample. This affects the more volatile components most.Initial column temperature should be below the boiling point of the solvent. Decrease the initial column temperature or use less volatile solvent.
Inlet descrimination. Injector temperature is too low. Later eluting and less volatile compounds have low response.Increase injection temperature.
Split peaks
Possible peaksSuggestions
Fluctuations in column temperatureRepair temperature control system
Mixed sample solvent for splitless or on-column injectionsUse single solvent
When using injection techniques that require 'solvent effect' refocusing such as splitless injectiion, the solvent must form a compact, continuous flooded zone in the column. If the solvent does not wet the stationary phase sufficiently as might be the case for methanol used with a nonpolarstationary phase, the solvent flooded zone may be several meters long and not of uniform thickness. This will result in broad and distorted peaks because the solutes will not be refocused into a narrow band near the beginning of the column.Installing a retention gap (5 meters of uncoated but deactivated column) ahead of the crhomatographic column may reduce or eliminate this problem.
Tailing peaks
Possible causeSuggestions
Contaminated or active injector liner, seal or columnClean or replace injector liner. Do not use glass wool in the liner. If necessary, replace the column.
Dead volume due to poorly installed liner or column.Confirm by injecting inert peak (methane). If it tails, column is not properly installed. Reinstall liner and column as necessary.
Ragged column endScore the tubing lightly with a ceramic scoring wafer or sapphire scriber before breaking it. Examine the end using magnifying glass. If the break is not clean and the end square, cut the column again. Point the end down while breaking it and while installing a nut and ferrule to prevent fragments from entering the column. Reinstall the column.
A bad match between the polarities of the stationary phase and the solventChange the stationaryphase. Usually polar analytes tail on no-polar columns, or dirty columns.
A cold region in the sample flow pathRemove any cold zones in the flow path
Debris in the liner or columnClean or replace the liner. Cut 10 cm off the end of the column and reinstall it.
Injection takes too long.Improve injection technique.
Split ration is too lowIncrease split ratio to at least 20:1
Overloading the inletDecrease the sample volume or dilute sample
Some types of compounds such as alcoholic amines, primary and secondary amines and carboxylic acids tend to tail.Try a more polar column. Make a derivative of the dsample.
Retention time shifts
Possible causeSuggestions
Change in column temperatureCheck GC oven temperature
Change in gas flow rate (linear velocity)Inject a detectable unretained sample such as methane to determine the linear gas velocity. Adjust gas pressure or flow to obtain proper values for your analytical method.
Leak in the injectorCheck the septum first. Change, if necessary. Find the leak and fix it.
Change of solventUse the same solvent for standards and samples.
Contaminated columnBake out the column. Cut 10 cm off the end of the column. If necessary, replace the column.
Loss of resolution
Possible causeSuggestions
Damage to stationary phase of columnReplace the column. This is usually indicated by excessive column bleeding or peak tailing.
Injector problemsCheck for leaks, inapropriate temperature, split ration, purge time, dirty liner, glass wool in liner.
Large increase in sample concentration
  • Dilute sample
  • Inject less
  • Use higher split ratio
Broad solvent front
Autosystem
Possible causeSuggestions
Bad column installationReinstall column
Injector leakFind and fix leak
Injection volume too largeDecrease sample size or dilute it
Injection temperature too lowIncrease injection temperature so the entire sample is vaporized 'instantly'. An injection temperature higher than the temperature limit of the column will not damage the column.
Split ratio is too lowIncrease split ratio.
Column temperature too lowIncrease column temperature (ba careful on maximum column temperature limit). Use a lower boiling solvent.
Initial column temperature too high for splitless injectionDecrease the initial column temperature. Use a less volatile solvent so the initial column temperature is below the solvent boiling point.
Purge time too long (splitless injection)Use a shorter purge valve close time.
Rapid column performance degradation
Possible causeSuggestions
Broken columnReplace column. Avoid damaging the polyimide coating on the column. Avoide temperatures above maximu column temperature limit. Avoid abrasion of the column. Remember, even if the column does not break immediately, when protective coating is damaged the column may possibly break spontaneously later.
Column too hot for too longReplace the column. Stay below limits specified for the column.
Exposure to oxygen, particularly at elevated temperaturesFind and fix any lieaks. Be sure carrier gas is sufficiently pure.
Chemical damage due to inorganic acids or basesKeep inorganic acids or bases out of column. Neutralize samples.
Contamination of the column with nonvolatile materialsPrevent nonvolatile materials from getting into column. For expample, use a guard column.

Column installation

Detailed information about GC column installation is available here.

Preventive maintenance

Autosystem Gc Manual Instructions

Injector cleaning
Detector cleaning

GNBX1098C-UNV - Section II: In-depth Installation Information

The following section provides in-depth information on instrument preparation procedures for installing and operating fused silica and stainless-steel capillary columns.

  1. Instrument Preparation
  2. Column Mounting and Installation





I. Instrument Preparation


Gas Purification

Gas purification is essential for good chromatographic results. Carrier gases must contain less than 1 ppm of oxygen, water vapor, or any other trace contaminant to prevent column degradation, shortened column lifetime, and increased stationary phase bleed. Contaminants cause ghost peaks to appear during temperature programming and degrade the quality of analytical data. The expense of using high-purity gases in combination with carrier gas purifiers will be offset by longer column lifetime and less instrument maintenance along with better instrument sensitivity.

Gas purifiers are available for specific types of contamination (moisture, hydrocarbon, or oxygen) or as a combination of filters that provides broader protection. We recommend using a Super Clean carrier gas cleaning kit on carrier gas lines because this single trap will remove moisture, hydrocarbons, and oxygen, eliminating the need to install multiple traps. These purifiers can be installed in-line or using a quick-install baseplate system. Make-up gas should also be contaminant free or baseline fluctuations and excessive detector noise can occur. Detector gases, such as hydrogen and compressed air, should be free of water and hydrocarbons or excessive baseline noise can result.

When using multiple filters in series, we suggest installing a moisture trap in front of the oxygen trap because moisture reacts with most oxygen traps. Install purifiers as closely as possible to the GC's bulkhead fitting, not system-wide. If purifiers are installed system-wide, a leaky fitting downstream of the trap could allow oxygen and moisture to enter the gas stream and degrade column performance. A moisture trap can also be used on the FID air line or the ECD make-up gas line to eliminate noisy, rolling baselines when operating at high detector sensitivities. If hydrocarbon contamination is suspected, install a hydrocarbon trap between the moisture and oxygen traps. To prevent spontaneous breakage, coil the line leading to and from the purifiers to relieve strain and isolate instrument vibrations. Because oxygen, moisture, and elastomeric contaminants can migrate through rubber or elastomeric diaphragms and enter the carrier gas, all regulators should be equipped with stainless-steel diaphragms. Leak check all connections prior to system use.


Traps shown:

A. Moisture Trap:
Super-Clean Ultra-High Capacity Moisture Filter (cat.# 22028)

Autosystem Gc Manual Transmission

B. Hydrocarbon Trap:
Super-Clean Ultra-High Capacity Hydrocarbon Filter (cat.# 22030)

C. High Capacity Indicating Oxygen Trap:
Super-Clean Ultra-High Capacity Oxygen Filter (cat.# 22029)

For more information on best practices for gas purification, read our guide to gas management supplies and review our filter selection.

Carrier Gas Selection

A fast carrier gas that exhibits a flat van Deemter profile is essential in obtaining optimum GC capillary column performance. Because capillary columns average over 30 meters in length (compared to 2 meters for packed columns), a carrier gas that minimizes the effect of dead time is important. In addition, because capillary columns are head pressure controlled, not flow controlled like most packed columns, the carrier gas flow decreases by 40 percent when programming from ambient to 300 °C. Therefore, a carrier gas that retains high efficiency over a wide range of flow rates is essential for obtaining good resolution throughout a temperature-programmed analysis.

Figure 1 shows the van Deemter profile for hydrogen, helium, and nitrogen carrier gases. The curves were generated by plotting the height equivalent to a theoretical plate (HETP, the length of the column divided by the total number of theoretical plates) against the column's average linear velocity. The lowest point on the curve indicates the carrier gas velocity at which the highest column efficiency is reached.

Figure 1: van Deemter plots of common carrier gases.


Figure 2: Hydrogen provides a much faster analysis than helium under isothermal conditions.

Run Conditions:
30 m, 0.25 mm ID, 0.25 µm Rtx-5 (cat.# 10223); 0.1 µL split injection of chlorinated pesticides; Oven temp: 210 °C isothermal; Inj./Det. Temp: 250 °C/300 °C; Linear velocity: hydrogen = 40 cm/sec, helium = 20 cm/sec; ECD sensitivity: 512 x 10-11 AFS; Split vent flow: 100 cm3/min; Peaks: 1. Tetrachloro-m-xylene, 2. alpha-BHC, 3. beta-BHC, 4. gamma-BHC, 5. delta-BHC, 6. Heptachlor, 7. Aldrin, 8. Heptachlor epoxide, 9. gamma-Chlordane, 10. Endosulfan I, 11. alpha-Chlordane, 12. Dieldrin, 13. DDE, 14. Endrin, 15. Endosulfan II, 16. DDD, 17. Endrin aldehyde, 18. Endosulfan sulfate, 19. DDT, 20. Endrin ketone, 21. Methoxychlor.


Figure 3 illustrates that hydrogen is only slightly faster than helium when both carrier gases are operated under the same temperature-programmed conditions. Also, note that helium improves the resolution of the early eluting compounds (peaks 1 & 2).

Figure 3: Analysis times between hydrogen and helium are more similar under temperature-programmed conditions.

Run Conditions:
30 m, 0.25 mm ID, 0.25 µm Rtx-5 (cat.# 10223); 0.1 µL split injection of phenols; Oven temp: 50 °C (hold 4 min) to 250 °C @ 8 °C/min (hold 5 min); Inj./Det. Temp: 280 °C; Linear velocity: hydrogen = 40 cm/sec, helium = 20 cm/sec; FID sensitivity: 32 x 10-11 AFS; Split vent: 40 cm3/min; Peaks: 1. Phenol, 2. 2-Chlorophenol, 3. 2-Nitrophenol, 4. 2,4-Dimethyl phenol, 5. 2,4-Dichlorophenol, 6. 4-Chloro-3-methyl phenol, 7. 2,4,6-Trichlorophenol, 8. 2,4-Dinitrophenol, 9. 4-Nitrophenol, 10. 2-Methyl-4,6-dinitrophenol, 11. Pentachlorophenol.


Exert Caution when using Hydrogen as a Carrier Gas

Hydrogen is explosive when concentrations exceed 4% in air and should only be used by individuals who have received proper training and understand the potential hazards. Proper safety precautions should be taken to prevent an explosion in the oven chamber. Some gas chromatographs are designed with spring-loaded doors, perforated or corrugated metal oven chambers, and back pressure/flow-controlled pneumatics, which minimize the hazards when using hydrogen carrier gas.

Additional precautions include:

  • Frequently checking for leaks using a thermal conductivity leak detector.
  • Minimizing the amount of carrier gas that could be expelled in the oven chamber if a leak were to occur by installing a needle valve, restrictor, or flow controller prior to the carrier inlet bulkhead fitting (only necessary for head pressure controlled systems).
  • Purging an inert gas (N2) into the oven chamber to displace oxygen and prevent an explosive atmosphere from forming.

Hydrogen is expelled from both the split vent and septum purge when it is used as a carrier gas. Because of hydrogen's fast diffusivity, an explosion in a laboratory setting is highly unlikely. However, a spark from static electricity can ignite the hydrogen exiting from a septum purge or split vent, which could cause a flame. Precautions to minimize the problems with hydrogen exiting the split vent or septum purge include the following:

  • Plumbing the exit lines to a hood or venting the escaping gas outside.
  • Plumbing the lines to exit into a vial of water.
  • Plumbing the exit lines to a position where analysts could not get burned if inadvertent ignition occurred.

Injector Maintenance

Perform injector maintenance prior to installing a capillary column. Periodic maintenance is required after installation depending on the number of injections and the cleanliness of the samples. Maintenance includes replacing inlet liners, critical inlet seals, and the septum. Review the instrument manual inlet diagram prior to disassembly.

Use Clean Inlet Liners

Don't install a new Restek column with a dirty inlet liner! For optimum column performance, the inlet liner needs to be free of septum particles, sample residue, and ferrule fragments. Use deactivated inlet liners when analyzing samples with active functional groups or compounds prone to decomposition or adsorption onto untreated glass surfaces. Restek offers an expansive catalog of inlet liners as well as a selection guide to help you find the best inlet liner for your application.

Protection Against Dirty Samples

Liner packing materials, such as wool, act as filters when analyzing samples that contain high molecular weight residue or particulates. However, wool greatly increases the surface area that the sample contacts and can be a source of adsorption or breakdown. It is critical that the wool be properly deactivated. If you pack your own liners, be careful inserting the wool into the liner because active sites can be created as the fibers break. For this reason, Restek liners are first packed with wool and then deactivated, a process that maximizes inertness and reproducibility. We do not recommend using packings coated with stationary phases. Alternative liner designs that minimize sample interaction with nonvolatile residue are also available.

Replacing Critical Seals

Replace the critical seal prior to installing an inlet liner (see instrument manual for seal location). Most capillary injection ports use a Viton O-ring or graphite ferrule to seal the liner inside the injection port body. The seal must fit tightly around the liner to prevent the carrier gas from leaking around the outside of the liner. If your GC uses a ferrule as the inlet seal, always pre-swage the ferrule to fit the liner before tightening it in the inlet (especially Varian inlets).

Changing Septa

Always use a high-quality, low-bleed septum that is suitable for your inlet temperature. We recommend replacing the septum frequently to prevent leaks and fragmentation. Otherwise, multiple injections and continuous exposure to a hot injection port will decompose the septum, causing particles to fall into the liner. Septum particles are a potential source of ghost peaks, loss of inertness, and carrier gas flow occlusion. It is best to install a new septum at the end of an analytical sequence so that it can condition in the injector and reduce the incidence of ghost peaks. Always use clean forceps when handling septa to avoid contamination.

Setting Detector and Make-Up Gas Flow Rates

Confirm that the make-up gas, detector fuel, and oxidant flow rates are set according to the instrument's specifications (Table I). Make-up gas flow rates that are set too low will cause tailing solvent peaks, baseline disturbances, decreased sensitivity, and detector noise. Some instruments do not have leak-tight detector cavities and require flow rate verification before the column is installed into the detector. However, for GCs with leak-tight detector cavities, it is usually easier to check detector and make-up gas flow rates after the column is installed.

Table I: Typical FID Flow Rates

Instrument

H2 (mL/min)

Make-Up (mL/min)

Air (mL/min)

Agilent

30

20

400

Varian

30

20

300

Shimadzu

30-60

40

500

PerkinElmer

45

20

450


II. Column Mounting and Installation

When hanging the column on the oven support rod, be careful that fused silica tubing does not contact any metal parts. Stainless-steel columns can be placed directly on the oven support rod. If there is not an oven support rod, one can be made by inserting a temperature-resistant pegboard hook into the corrugated oven wall or by hanging a 1⁄16-inch 'S' hook from the oven ceiling. Be careful not to damage the oven thermocouple or interfere with the fan operation when installing homemade brackets.

Position the column so that it is midway between the injector and detector. This reduces thermal gradients and enhances retention time reproducibility. Uncoil one or two loops of tubing. When using fused silica columns, be careful not to scratch the column surface against the metal cross bars when removing loops. This abrasion of the polyimide coating could lead to spontaneous breakage.

Caution: When removing loops from 0.53 mm ID columns, pull the tubing from the cage at the point with the widest gap between the metal crossbars. Avoid sharp bends that will break the tubing.

Choosing Ferrules

Graphite or Vespel/graphite ferrules are used to seal the column to the injector and detector in capillary gas chromatography. Both ferrule types have advantages and disadvantages. Graphite ferrules are the easiest to use, and they are leak free, universal for most systems, and preferred by most beginning capillary chromatographers. Because graphite ferrules are soft, they easily conform to column outside diameters and different types of instrument fittings. However, they can flake or fragment upon removal, causing particles to lodge in the injector or detector liners, and they will not hold a seal under vacuum. Vespel/graphite ferrules are hard, and they must match the column and fitting dimensions closely to seal properly. In addition, because Vespel/graphite ferrules can deform during initial heating, they need to be retightened or leakage will occur. Vespel/graphite ferrules do not fragment, can be reused many times, and are preferred by mass spectroscopists since they do not contaminate the ion source with particles and maintain their seal under vacuum. In all cases, it is best to choose a ferrule that fits snugly or is slightly larger than the capillary tubing OD (see table below). This minimizes the need for excessive torque to properly seal the ferrule to the column.

Nominal
Tubing ID

Nominal Tubing OD

MXT

Fused Silica

0.05 mm

---

---

0.363 mm

+/-0.012 mm

0.10 mm

0.23 mm

+/-0.0254 mm

0.363 mm

+/-0.012 mm

0.15 mm

0.41 mm

+/-0.0254 mm

0.363 mm

+/-0.012 mm

0.18 mm

0.36 mm

+/-0.0254 mm

0.34 mm

+/-0.01 mm

0.25 mm

0.41 mm

+/-0.0254 mm

0.37 mm

+/-0.04 mm

0.28 mm

0.56 mm

+/-0.0254 mm

---

---

0.32 mm

0.41 mm

+/-0.0254 mm

0.45 mm

+/-0.04 mm

0.53 mm

0.74 mm

+/-0.0254 mm

0.69 mm

+/-0.05 mm

0.75 mm

0.93 mm

+/-0.0254 mm

---

---


Installation Preparation

Cut each column end squarely, approximately 10 centimeters from the end seals. To obtain a square cut with fused silica columns, place the column end against the forefinger and score the polyimide layer lightly and rapidly with a sapphire scribe (cat.# 20182) or a ceramic scoring wafer (cat.# 20116). Score only one side of the column. Point the column end down to prevent polyimide or fused silica shards from falling inside and quickly flick the column just above the score.

Proper and improper fused silica cuts.


Cut metal capillary tubing by scoring the tubing wall (without cutting completely through) with the edge of a sharp file or ceramic scoring wafer. Wipe any filings off the tubing and bend it away from the score. Once the score opens, bend the tubing in the opposite direction (toward the score) until it snaps into two pieces. If the hole is not round or there is a burr on the tubing, try the procedure again. The flat side of a ceramic scoring wafer can be used to polish or round the column end into a smooth conical shape. We do not recommend using high-speed wheels or grinders to cut the metal tubing since they may introduce metal filings into the tubing or ruin the polymer near the cut from the high temperatures created.

Proper and improper MXT column cuts.


Next, install the nut and ferrule to the inlet in the manner described in the instrument manual. Use a mini hand drill (cat.# 20122) to enlarge the ferrule ID if it does not slide easily onto the column. Prevent shards from falling into the column bore by pointing the column end down when installing the ferrule. Slide the connecting nut and ferrule approximately 20 cm down the length of the column to make installation easier. Cut an additional 10 cm from the column end after the nut and ferrule have been installed to remove any ferrule fragments that might have been forced into the column bore. Examine the quality of the cut with a small 10x pocket magnifier (cat.# 20124) and make sure that the cut is square. Jagged silica edges or exposed polyimide cause adsorption and tailing peaks, so it is very important that the column ends are cut uniformly. It may take several times, but once a square cut has been obtained, proceed with the installation. (Use an old column to practice making consistently square cuts.)

Inlet Installation

Consult the instrument manual to determine the correct column insertion distance for your injector. It is important to install the column at the exact distance recommended by the injector manufacturer or poor peak symmetry and quantitation could occur. Thread the column nut and ferrule onto the capillary column and set the correct installation depth using the appropriate capillary installation gauge for your instrument. Gently insert the column end into the inlet fitting, making sure that the end is not crushed or scraped against the metal injection port fittings. While maintaining the correct distance, use a capillary wrench to tighten the nut approximately one-half turn past finger-tight until the column is held firmly. The ferrule is tight if the column cannot be pulled from the fitting while applying gentle pressure.

Make sure the fused silica tubing is not sharply bent when installing the column. The tubing should gently bend from the cage to the fitting in angles greater than 90° or in diameters greater than 15 cm. Sharp bends weaken the fused silica and eventually cause spontaneous breakage during use. If the tubing cannot be positioned to avoid sharp bends, then repeat the installation process and uncoil the appropriate amount of tubing from the cage.


Establishing Flow

Turn the carrier gas on and set the column head pressure to the values indicated in Table II.* These values represent approximate head pressures and flow rates. The exact optimum pressures and flow rates for a particular column will be set at a later time.

Table II: Approximate Column Head Pressure (He or H2 carrier gas)

length (m)

0.18 mm ID

0.25 mm ID

0.32 mm ID

0.53 mm ID

15

6 psig

3 psig

2 psig

20

14 psig

30

12 psig

8 psig

4 psig

40

30 psig

60

24 psig

16 psig

8 psig

105

40 psig

30 psig

14 psig

Septum Purge Flow: between 2 and 5 cc/min


Autosystem Xl Gc User Manual

The split ratio is the amount of carrier gas exiting the split vent vs. the amount of carrier gas entering the capillary column. The split ratio should be adjusted so the sample amount reaching the column does not exceed the column's capacity. Typically, a split ratio of 50 to 1 is used. Table III lists common split vent flow rates found using hydrogen or helium carrier gases. Use the equation below to calculate the split ratio.

While the flow rate exiting the split vent is easy to measure with conventional bubble meters, the low flow rate exiting a capillary column can be difficult to measure. The following equation can be used to approximate the column flow rate.

where pi = 3.1459, column radius and length are in centimeters, and time is in minutes.
For example, a 30 meter x 0.53 mm ID column operated at 20 cm/sec. linear velocity with helium has a flow rate of 2.65 cm3/min.

Table III: Typical Split Vent Flow Rates (50 to 1 split ratio)

Carrier gas

0.18 mm ID

0.25 mm ID

0.32 mm ID

0.53 mm ID

helium

15 cc/min

35 cc/min

80 cc/min

125 cc/min

hydrogen30 cc/min70 cc/min160 cc/min250 cc/min
Safety Tip: Always use a split vent trap when injecting hazardous or carcinogenic chemicals into a split/splitless inlet system.

Good Operating Practice

Operating a column without carrier gas flow causes irreparable damage to the stationary phase. Confirm flow by inserting the column outlet into a vial of solvent such as acetone or isopropyl alcohol prior to installing it into the detector. The appearance of bubbles at the column outlet confirms carrier gas flow. Allow the column to purge with carrier gas for fifteen minutes before installing the column outlet into the detector to remove any room air that may have diffused inside the column.

Outlet Installation

Install the nut and ferrule to the detector in the manner described in the instrument manual. Gently insert the column end into the outlet fitting making sure that it is not crushed or scraped against the metal detector parts. Regardless of the GC manufacturer, a higher degree of inertness and better peak symmetry results if the column end can be installed 1 to 3 mm from the detector jet orifice. Be careful not to push the column beyond the jet orifice or the column end will burn in the flame. Some jets are too narrow to insert the column close to the jet orifice. If this is the case, pull the column end approximately 2 mm away from the narrowed point to prevent flow occlusion or loss of inertness. While maintaining the correct insertion distance, use a capillary wrench to tighten the nut approximately one-half turn past finger-tight until the column is held firmly. The ferrule is tight when the column cannot be pulled from the fitting while applying gentle pressure.

Note — Be cautious when using stainless-steel or aluminum-clad columns in gas chromatographs or GC-MS systems with electrically energized detector jets or orifices. These columns will conduct electricity and cause a short if the end of the column is installed too far into the energized detector. Always turn off the electrometer with Varian, PerkinElmer, and Shimadzu FIDs (since the detector is not grounded) when installing stainless-steel or aluminum-clad columns.

Leak-Checking Techniques

The best way to leak check a capillary column system is to use a thermal conductivity leak detector (cat.# 28500).* These portable devices detect minute traces of helium or hydrogen carrier gas without contaminating the system. Leaks in mass spectrometers can easily be determined by monitoring for mass 28 (N2) or 32 (O2). Alternately, spraying argon gas and monitoring for mass 40 is also effective for mass spectrometers.

Never use liquid leak detectors that contain soaps or surfactants in capillary chromatography. Leaks draw these materials inside the system and contaminate the column, making high-sensitivity operation difficult. In addition, liquid leak detectors can cause permanent damage to the capillary column by depolymerizing the silicone stationary phase.

Once the system is leak free, set the injector and detector temperatures approximately 20 °C above the final operating temperature of the analysis or at the column's maximum operating temperature. Then, light or turn on the detector. Caution: Do NOT exceed the maximum operating temperature of the column.


III. Setting Optimum Flow Rates

The most accurate and reproducible way to set the capillary column flow is by injecting a non-retained substance (see Table IV) to determine the linear velocity (dead volume time) and adjusting the head pressure until the linear velocity is at its optimum value. Measuring the flow rate at the column outlet is not recommended because it does not account for column-to-column variations. Relying on head pressure readings is not recommended due to instrument and column variations. Exact flow rate values for a particular column can only be determined after the linear velocity is set at its optimum value.

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Because most capillary columns are operated in a pressure (not flow) controlled mode, the temperature at which the linear velocity is set is critical. To obtain the optimum performance, linear velocity should always be set at the operating temperature for an isothermal analysis. For a temperature-programmed analysis, the column's linear velocity should be optimized at an oven temperature where a hard-to-separate peak pair elutes. If there are no critical peak pairs, raise the oven temperature to the temperature reached midway through the programmed run. Always document which non-retained compound was used, and the temperature at which the linear velocity was set in order to easily reproduce the analysis.

To set dead time, inject 2.0 µL of a non-retained substance that is compatible with the detector (Table IV). Accurately mark the injection starting time and peak elution time with an electronic integrator.

Table IV: Recommended compounds for dead volume determination by detector type.

Detector Type

Recommended Dead Volume Compound

FID/TCD

CH4

NPD

acetonitrile vapors

ECD

methylene chloride vapors or air

ELCD

dichlorodifluoromethane vapors

MS

O2 or N2 (air)

PID

ethylene or acetylene


The compounds listed above may be slightly retained on thick film phases (1.0 to 7.0 µm) giving erroneous dead volume times. However, they are reproducible for similar column types on subsequent analyses.

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Adjust the column head pressure until the correct dead time is obtained for the appropriate column length and carrier gas (Table V). Once the dead volume time has been finalized, check the split vent and septa purge flow to make sure they did not change significantly. (Head pressure regulated capillary systems require adjustment of the split vent flow if the pressure changed significantly. Back pressure regulated capillary systems should not require adjustment.)

The values in Table V were obtained using the formula for average linear velocity (u). The optimum u is 40 cm/sec for hydrogen, 20 cm/sec for helium, and 12 cm/sec for nitrogen.* Insert the appropriate values in the equation below to obtain the required dead volume time for column lengths not listed.

Table V: Dead volume times for commonly used capillary column lengths.

Length (m)HydrogenHelium
150.63 min1.25 min
301.25 min2.5 min
602.5 min5.0 min
1054.38 min8.75 min
* Nitrogen is not recommended as a carrier gas for most capillary columns because inadequate resolution and longer analysis times result.

IV. Confirming Installation Integrity

We highly recommend using the dead volume peak shape test and the solvent peak shape test to confirm installation integrity.

Dead Volume Peak Shape Test

Examine the dead volume peak. A sharp, narrow peak that shows no sign of tailing indicates an unobstructed sample pathway and correct installation (Figure 4). Tailing peaks indicate improper column installation, gross contamination of the splitter liner, a cracked splitter liner, improper sweeping of the column end by make-up gas, a crushed column end, or a column that has degraded. The cause of a tailing non-retained peak must be corrected before using the column analytically.

Figure 4: Dead volume peak shape test

Tailing peaks indicate improper installation

Tailing peaks indicate improper installation


Solvent Peak Shape Test

The solvent peak shape test is an additional indicator of proper column installation in the inlet and outlet. Since compounds used to set the dead volume are usually gases at room temperature (methane), they are not extremely sensitive indicators of system or installation problems. A 1 µL injection of a liquid solvent, such as methylene chloride, expands to over 500 µL of gas volume, making any potential installation or system problem readily apparent. A tailing solvent peak is a sensitive indicator of broken, undeactivated, or contaminated inlet liners. Tailing solvents also indicate problems with inadequate make-up gas or improper column insertion into the detector.

To perform the test, inject 1 µL of a solvent in split mode at 40 °C isothermal and examine the peak shape (Figure 5). The solvent peak should be symmetrical and show minimal tailing. If tailing appears, suspect an installation or system problem. The cause of a tailing solvent peak must be corrected before using the column analytically.

Figure 5: Solvent peak shape test.



V. Conditioning

Before conditioning a column at an elevated temperature, make sure there is proper flow, there are no leaks present, and there is an ample supply of oxygen-free carrier gas for the conditioning period. Conditioning at elevated temperatures without flow permanently damages or destroys the performance of the capillary column. Conditioning with an oxygen leak present causes the column to exhibit permanent high bleed and destroys its utility at high operating temperatures.

To condition the column, set the GC oven at 40 °C, hold 15 minutes, then program at 10 °C/min to the maximum operating temperature (see the test chromatogram included with the column). Alternatively, the column can be conditioned 25 °C below the maximum operating temperature if it is going to be used at relatively low temperatures. Hold the column at this temperature for two hours or until the baseline stabilizes. Overnight conditioning is not necessary with Restek capillary columns operated at moderate detector sensitivities (approx. 8 x 10-11 AFS). Overnight conditioning is necessary when the column is going to be operated at high detector sensitivities (<4 x 10-11 AFS) and at oven temperatures close to the maximum operating temperature (see Figure 6). Extra conditioning may be required if operating the column at high sensitivity (<1 x 10-11 AFS) or using thick films (>1 µm). The column should not be installed in very sensitive or hard-to-clean detectors such as ECDs, NPDs, FPDs, PIDs, ELCDs, or mass spectrometers during the initial conditioning period. This practice is particularly important with very thick film columns (>3 µm), which produce more stationary phase bleed. (Before conditioning thick film columns, cap the detector.) The Crossbond procedure used by Restek produces columns with very low bleed levels. If your column is experiencing higher bleed than shown on the test chromatogram, contact us immediately at 800-356-1688 (ext. 4).

Figure 6: Overnight conditioning reduces column bleed.



VI. Test Mixtures

Restek tests every column with a stringent test mix to determine that the column and GC systems are performing correctly. It is good analytical practice to run the test mixture before analyzing samples to assess system problems or chemical incompatibilities that may be present. It is also good practice to inject the test mix weekly to monitor column performance and to indicate when maintenance procedures are needed.

Inject a column test mixture according to the test chromatogram conditions. Review the test chromatogram to determine peak identities for your specific column. Carefully compare Restek's test chromatogram and your analytical run, noting changes in peak shapes. In general, tailing hydrocarbon and fatty acid methyl ester (FAME) peaks indicate dead volume or contamination in the inlet or detector. Check the inlet and outlet liners for ferrule or septa fragments and reinstall the column. Excessively tailing solvent peaks and tailing or adsorbed peaks such as 2,3-butanediol, octanol, 2-ethylhexanoic acid, or dicyclohexylamine indicate the need for cleaning and redeactivating the split/splitless liner, or that there is a problem with the make-up gas system. Figure 7 shows the Grob mix run on a relatively nonpolar stationary phase. In the top chromatogram, the Grob mix on this column shows poor performance. Tailing 2,3-butanediol, octanol, and dicyclohexylamine peaks could result from inadequate liner deactivation. Asymmetrical hydrocarbon and FAME peaks indicate that the column may have been improperly installed. However, in the bottom chromatogram, the Grob mix shows that this column is performing adequately. Symmetrical hydrocarbon and FAME peaks indicate that the column has been installed properly (no dead volume exists in column connection). Active probes such as 2,3-butanediol, octanol, nonanal, and dicyclohexylamine are symmetrical indicating adequate deactivation of the split/splitless liner.

Figure 7: The Grob mix determines if the column and GC systems are performing correctly.

Poor Performance

Acceptable Performance

Run Conditions:
30 m, 0.32 mm ID, 0.50 µm Rtx-1 (cat.# 10139); 0.8 µL injection of the Grob test mixture (cat.# 35000); Oven temp: 40 °C to 250 °C @ 6 °C/min; Inj./Det. Temp: 325 °C; Carrier gas: hydrogen; Linear velocity: 40 cm/sec; FID sensitivity: 4 x 10-11 AFS; Split ratio: 35:1; Split vent: 112 cm3/min; Peaks: 1. 2,3-Butanediol, 2. n-Decane, 3. 1-Octanol, 4. 2,6-Dimethylphenol, 5. Nonanal, 6. n-Dodecane, 7. 2-Ethylhexanoic acid, 8. 2,6-Dimethylaniline, 9. Methyl decanoate, 10. Dicyclohexylamine, 11. Methyl undecanoate, 12. Methyl dodecanoate.

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